{
  "_id": "6a438c4b8e0887cec9b7125d",
  "Package": "wompwomp",
  "Version": "0.99.0",
  "Date": "2026-03-30",
  "Title": "Optimizing Alluvial Plots",
  "Authors@R": "c(person(\"Joseph\", \"Rich\", role = c(\"aut\", \"cre\"), email = \"jmrich@caltech.edu\", comment = c(ORCID = \"0000-0003-1400-8479\")), person(\"Conrad\", \"Oakes\", role = \"aut\", email = \"coakes@caltech.edu\"), person(\"Lior\", \"Pachter\", role = \"aut\", comment = c(ORCID = \"0000-0002-9164-6231\")))",
  "Description": "Sort k-partite graphs with node order, layer order, and\nnode grouping optimized with a heuristic to (nearly) minimize\nedge crossings. Useful for improving visualizations with\nalluvial plots by \"untangling\" the graphs.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.3.3",
  "Config/testthat/edition": "3",
  "URL": "https://github.com/pachterlab/wompwomp",
  "BugReports": "https://github.com/pachterlab/wompwomp/issues",
  "Config/pak/sysreqs": "libglpk-dev libicu-dev libxml2-dev",
  "Repository": "https://pachterlab.r-universe.dev",
  "Date/Publication": "2026-05-19 22:21:02 UTC",
  "RemoteUrl": "https://github.com/pachterlab/wompwomp",
  "RemoteRef": "HEAD",
  "RemoteSha": "d3d815337fd666716230f9de3dddd0ceb13d4ef9",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-30 09:24:55 UTC",
    "User": "root"
  },
  "Author": "Joseph Rich [aut, cre] (ORCID: <https://orcid.org/0000-0003-1400-8479>),\nConrad Oakes [aut],\nLior Pachter [aut] (ORCID: <https://orcid.org/0000-0002-9164-6231>)",
  "Maintainer": "Joseph Rich <jmrich@caltech.edu>",
  "MD5sum": "5b87537207778cd8dec46d9fbd9b65fc",
  "_user": "pachterlab",
  "_type": "src",
  "_file": "wompwomp_0.99.0.tar.gz",
  "_fileid": "ada710c132aff074be32aaef33961480b0638a4421053faf3fad30e301b0a97c",
  "_filesize": 314468,
  "_sha256": "ada710c132aff074be32aaef33961480b0638a4421053faf3fad30e301b0a97c",
  "_created": "2026-06-30T09:24:55.000Z",
  "_published": "2026-06-30T09:28:43.465Z",
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 84255886253,
      "time": 172,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7976397657"
    },
    {
      "job": 84255886230,
      "time": 195,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "7976406194"
    },
    {
      "job": 84255886270,
      "time": 163,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7976384419"
    },
    {
      "job": 84255886227,
      "time": 181,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "7976387891"
    },
    {
      "job": 84255214511,
      "time": 207,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "7976328276"
    },
    {
      "job": 84255886237,
      "time": 147,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7976387581"
    },
    {
      "job": 84255886264,
      "time": 98,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7976369070"
    },
    {
      "job": 84255886261,
      "time": 100,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7976369584"
    },
    {
      "job": 84255886274,
      "time": 94,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "7976367383"
    }
  ],
  "_buildurl": "https://github.com/r-universe/pachterlab/actions/runs/28433943095",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/pachterlab/wompwomp",
  "_commit": {
    "id": "d3d815337fd666716230f9de3dddd0ceb13d4ef9",
    "author": "josephrich98 <josephrich98@gmail.com>",
    "committer": "josephrich98 <josephrich98@gmail.com>",
    "message": "fixed global variable declaration\n",
    "time": 1779229262
  },
  "_maintainer": {
    "name": "Joseph Rich",
    "email": "jmrich@caltech.edu",
    "login": "josephrich98",
    "description": "",
    "uuid": 76865251,
    "orcid": "0000-0003-1400-8479"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "TSP",
      "role": "Imports"
    },
    {
      "package": "R6",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "vctrs",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "vdiffr",
      "role": "Suggests"
    },
    {
      "package": "magick",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "gtools",
      "role": "Suggests"
    },
    {
      "package": "mclust",
      "role": "Suggests"
    },
    {
      "package": "here",
      "role": "Suggests"
    },
    {
      "package": "stringr",
      "role": "Suggests"
    },
    {
      "package": "reticulate",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "ggalluvial",
      "role": "Suggests"
    },
    {
      "package": "sessioninfo",
      "role": "Suggests"
    }
  ],
  "_owner": "pachterlab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-27",
      "n": 7
    },
    {
      "week": "2025-28",
      "n": 2
    },
    {
      "week": "2025-29",
      "n": 6
    },
    {
      "week": "2025-31",
      "n": 18
    },
    {
      "week": "2025-33",
      "n": 1
    },
    {
      "week": "2025-34",
      "n": 31
    },
    {
      "week": "2025-35",
      "n": 7
    },
    {
      "week": "2025-36",
      "n": 2
    },
    {
      "week": "2025-38",
      "n": 2
    },
    {
      "week": "2025-39",
      "n": 13
    },
    {
      "week": "2025-40",
      "n": 7
    },
    {
      "week": "2025-41",
      "n": 6
    },
    {
      "week": "2025-42",
      "n": 10
    },
    {
      "week": "2025-45",
      "n": 4
    },
    {
      "week": "2025-46",
      "n": 5
    },
    {
      "week": "2025-47",
      "n": 1
    },
    {
      "week": "2025-49",
      "n": 12
    },
    {
      "week": "2026-06",
      "n": 6
    },
    {
      "week": "2026-12",
      "n": 4
    },
    {
      "week": "2026-14",
      "n": 10
    },
    {
      "week": "2026-21",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 31,
  "_contributors": [
    {
      "user": "josephrich98",
      "count": 265,
      "uuid": 76865251
    },
    {
      "user": "oakesc",
      "count": 60,
      "uuid": 61437701
    },
    {
      "user": "corybrunson",
      "count": 8,
      "uuid": 7768027
    },
    {
      "user": "lakigigar",
      "count": 6,
      "uuid": 2963672
    }
  ],
  "_userbio": {
    "uuid": 10359946,
    "type": "organization",
    "name": "Pachter Lab",
    "followers": 400
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/wompwomp"
  },
  "_devurl": "https://github.com/pachterlab/wompwomp",
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/wompwomp.html",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/pachterlab/wompwomp",
  "_realowner": "pachterlab",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.99.0",
      "date": "2026-06-29"
    }
  ],
  "_exports": [
    "compute_crossing_objective",
    "get_lode_clusters",
    "get_lode_clusters_options",
    "lode_cluster_pal",
    "prep_for_lodes",
    "setup_python_env",
    "sort_to_uncross",
    "sort_to_uncross_options"
  ],
  "_help": [
    {
      "page": "compute_crossing_objective",
      "title": "Determine overlapping edges",
      "topics": [
        "compute_crossing_objective"
      ]
    },
    {
      "page": "get_lode_clusters",
      "title": "Color alluvia",
      "topics": [
        "get_lode_clusters"
      ]
    },
    {
      "page": "get_lode_clusters_options",
      "title": "Control Options for 'get_lode_clusters()'",
      "topics": [
        "get_lode_clusters_options"
      ]
    },
    {
      "page": "lode_cluster_pal",
      "title": "Make stratum color list",
      "topics": [
        "lode_cluster_pal"
      ]
    },
    {
      "page": "prep_for_lodes",
      "title": "Preprocess data",
      "topics": [
        "prep_for_lodes"
      ]
    },
    {
      "page": "setup_python_env",
      "title": "Setup Python environment for this package",
      "topics": [
        "setup_python_env"
      ]
    },
    {
      "page": "sort_to_uncross",
      "title": "Sorts a dataframe to minimize crossings in a parallel sets / alluvial plot.",
      "topics": [
        "sort_to_uncross"
      ]
    },
    {
      "page": "sort_to_uncross_options",
      "title": "Control Options for 'sort_to_uncross()'",
      "topics": [
        "sort_to_uncross_options"
      ]
    }
  ],
  "_readme": "https://github.com/pachterlab/wompwomp/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "codetools",
    "cpp11",
    "dplyr",
    "foreach",
    "generics",
    "glue",
    "igraph",
    "iterators",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rlang",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "TSP",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "plotting.Rmd",
      "filename": "plotting.html",
      "title": "Plotting with ggalluvial",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2025-12-04 08:02:22",
      "modified": "2026-03-30 20:18:51",
      "commits": 9
    },
    {
      "source": "wompwomp_intro.Rmd",
      "filename": "wompwomp_intro.html",
      "title": "Quick Start: An Introduction to wompwomp",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2025-08-25 19:08:10",
      "modified": "2026-05-19 22:21:02",
      "commits": 23
    }
  ],
  "_score": 7.290702243287854,
  "_indexed": true,
  "_nocasepkg": "wompwomp",
  "_universes": [
    "pachterlab",
    "josephrich98"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.99.0",
      "date": "2026-06-30T09:27:50.000Z",
      "distro": "resolute",
      "commit": "d3d815337fd666716230f9de3dddd0ceb13d4ef9",
      "fileid": "2a5e633b1ce1f62e2fd08a6836ce7c540e6bcacd4561c5fbe1a0c9548340d4d7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pachterlab/actions/runs/28433943095"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.99.0",
      "date": "2026-06-30T09:28:01.000Z",
      "distro": "resolute",
      "commit": "d3d815337fd666716230f9de3dddd0ceb13d4ef9",
      "fileid": "3b3546d1f97349b08ac66ac4af242b9607be3e47386848ebf9c7b16704d0dd25",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pachterlab/actions/runs/28433943095"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.99.0",
      "date": "2026-06-30T09:27:13.000Z",
      "commit": "d3d815337fd666716230f9de3dddd0ceb13d4ef9",
      "fileid": "e1140f5f0b7985194fd370006973b7fc94ba74e9dc544a8ab17903147f1a3732",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pachterlab/actions/runs/28433943095"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.99.0",
      "date": "2026-06-30T09:27:15.000Z",
      "commit": "d3d815337fd666716230f9de3dddd0ceb13d4ef9",
      "fileid": "c02cee11e45c9c6414aa8a3c3d32cba2d776aa47b11708a605a087ca3cd8ccf8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pachterlab/actions/runs/28433943095"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.99.0",
      "date": "2026-06-30T09:27:41.000Z",
      "commit": "d3d815337fd666716230f9de3dddd0ceb13d4ef9",
      "fileid": "1662440bdcfbab35190c8b92ea1a13f2f3fb3449ddf9d69423e30fc45c4ce0bf",
      "status": "success",
      "buildurl": "https://github.com/r-universe/pachterlab/actions/runs/28433943095"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-06-30T09:26:19.000Z",
      "commit": "d3d815337fd666716230f9de3dddd0ceb13d4ef9",
      "fileid": "5220d990a71d6d63953ce4528d65e8153787039ccf3c993afbd8ab82955c7cc4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pachterlab/actions/runs/28433943095"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-06-30T09:26:20.000Z",
      "commit": "d3d815337fd666716230f9de3dddd0ceb13d4ef9",
      "fileid": "62a35d7b0ea7fc8c4ed5ce27fe47a4bd1152917befd6575d2dba0a3441863bab",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pachterlab/actions/runs/28433943095"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-06-30T09:26:19.000Z",
      "commit": "d3d815337fd666716230f9de3dddd0ceb13d4ef9",
      "fileid": "950feb946952273e7357fbd65564973a69bca68ac1be26523a7487fd16aeff8a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/pachterlab/actions/runs/28433943095"
    }
  ]
}