Weighted Crossing Minimization: wompwomp vs. Classical Heuristics1 months ago
Background | Establishing ground truth | Synthetic weighted data | Running the comparison | Results | Discussion
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Calling wompwomp from Inside ggalluvial2 months ago
Sorting and colouring inside the layers | Choosing and tuning an algorithm | Axis order
Plotting wompwomp Results with ggalluvial2 months ago
Calling wompwomp from inside ggalluvial
Overview of Voyager3 months ago
Installation | Introduction | Dataset | Univariate spatial statistics | Bivariate spatial statistics | Multivariate spatial statistics | Plotting | Session info
Quick Start: An Introduction to wompwomp5 months ago
Introduction to the SpatialFeatureExperiment class7 months ago
Installation | Class structure | Introduction | Geometries | Column and row | Annotation | Spatial graphs | Multiple samples | Object construction | From scratch | Space Ranger output | Vizgen MERFISH output | 10X Xenium output | Nanostring CosMX output | Other technologies | Coercion from SpatialExperiment | Coercion from Seurat | Operations | Non-geometric | Geometric | Crop | Transform | Limitations and future directions | Session info
Using concordex in to assess cluster boundaries in scRNA-seq1 years ago
Introduction | Preprocessing | Graph based clustering in PCA space | Enter concordex | Session info | References
Save/load SpatialFeatureExperiment to/from file2 years ago
Overview | Xenium demo | Session info
Overview of concordexR2 years ago
Installation | Example of main functionality | SessionInfo
Example SpatialFeatureExperiment datasets3 years ago
Installation | Usage