Package: wompwomp 1.0.0

Joseph Rich

wompwomp: Optimizing Alluvial Plots

Sort k-partite graphs with node order, layer order, and node grouping optimized with a heuristic to (nearly) minimize edge crossings, and render the result as an alluvial plot. Useful for improving visualizations with alluvial plots by "untangling" the graphs.

Authors:Joseph Rich [aut, cre], Conrad Oakes [aut], Lior Pachter [aut]

wompwomp_1.0.0.tar.gz
wompwomp_1.0.0.zip(r-4.7-x86_64)wompwomp_1.0.0.zip(r-4.7-arm64)wompwomp_1.0.0.zip(r-4.6-x86_64)wompwomp_1.0.0.zip(r-4.6-arm64)wompwomp_1.0.0.zip(r-4.5-x86_64)
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wompwomp_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
wompwomp/json (API)

# Install 'wompwomp' in R:

install.packages('wompwomp', repos = c('https://pachterlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pachterlab/wompwomp/issues

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

cpp

7.55 score 33 stars 15 scripts 300 downloads 9 exports 46 dependencies

Last updated from:88fba6059f. Checks:15 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	127
linux-devel-x86_64	OK	160
source / vignettes	OK	455
linux-release-arm64	OK	151
linux-release-x86_64	OK	164
macos-release-arm64	OK	202
macos-release-x86_64	OK	455
macos-oldrel-arm64	OK	194
macos-oldrel-x86_64	OK	288
windows-devel-arm64	OK	368
windows-devel-x86_64	OK	149
windows-release-arm64	OK	423
windows-release-x86_64	OK	113
windows-oldrel-x86_64	OK	119
wasm-release	OK	131

Exports:compute_color_agreement compute_crossing_objective get_lode_clusters get_lode_clusters_options lode_cluster_pal plot_alluvial prep_for_lodes sort_to_uncross sort_to_uncross_options

Dependencies:base64enc cli codetools cpp11 dplyr farver foreach generics ggalluvial ggforce ggplot2 glue gtable igraph isoband iterators jsonlite labeling lattice lazyeval lifecycle magrittr MASS Matrix pillar pkgconfig polyclip purrr R6 RColorBrewer Rcpp rlang S7 scales stringi stringr systemfonts tibble tidyr tidyselect TSP tweenr utf8 vctrs viridisLite withr

Weighted Crossing Minimization: wompwomp vs. Classical Heuristics

Rendered fromweighted_two_sided_comparison.Rmdusingknitr::rmarkdown

Last update: 2026-09-15
Started: 2026-09-09

Calling wompwomp from Inside ggalluvial

Sorting and colouring inside the layers | Choosing and tuning an algorithm | Axis order

Rendered fromggalluvial_integration.Rmdusingknitr::rmarkdown

Last update: 2026-09-09
Started: 2026-09-09

Plotting wompwomp Results with ggalluvial

Calling wompwomp from inside ggalluvial

Rendered fromplotting.Rmdusingknitr::rmarkdown

Last update: 2026-09-09
Started: 2025-12-04

Quick Start: An Introduction to wompwomp

Rendered fromwompwomp_intro.Rmdusingknitr::rmarkdown

Last update: 2026-05-19
Started: 2025-08-25

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Color agreement of a stratum coloring	compute_color_agreement
Determine overlapping edges	compute_crossing_objective
Color alluvia	get_lode_clusters
Control Options for 'get_lode_clusters()'	get_lode_clusters_options
Make stratum color list	lode_cluster_pal
Generate an Alluvial Plot with Minimal Cluster Cross-over	plot_alluvial
wompwomp alluvial plotting	plot_alluvial-internals
Preprocess data	prep_for_lodes
Sorts a dataframe to minimize crossings in a parallel sets / alluvial plot.	sort_to_uncross
Control Options for 'sort_to_uncross()'	sort_to_uncross_options